Finding a protein-packed breakfast that actually tastes good can feel like searching for a needle in a haystack.
That’s where these blueberry protein muffins come in handy – they’re perfect for grab-and-go mornings, packed with the protein you need to stay full until lunch, and best of all, they taste like a treat rather than health food.
Plus, you can make a batch on Sunday and have breakfast sorted for the whole week ahead.

4 Reasons These Protein Muffins Will Change Your Life
- High protein content – With protein powder and Greek yogurt, these muffins pack a protein punch that makes them perfect for post-workout snacks or a filling breakfast on the go.
- Quick preparation – You can whip these up in just 35-45 minutes, making them perfect for meal prep or last-minute baking.
- Simple ingredients – Most of these ingredients are probably already in your pantry, and there’s nothing complicated or hard to find.
- Healthier alternative – Using Greek yogurt and honey instead of excess sugar, plus the natural sweetness of blueberries, makes these muffins a better choice than store-bought versions.
Fresh or Frozen Blueberries?
Fresh or frozen blueberries both work great in these protein muffins, so use whatever you have on hand.
If you’re going with fresh berries, look for ones that are firm and deep blue in color with a slight silvery coating – that dusty look is actually a good sign and helps protect the berries.
When using frozen blueberries, don’t thaw them before adding to your batter, as this can make your muffins turn blue-green and get too wet.
Wild blueberries tend to be smaller and more flavorful than cultivated ones, but they’re harder to find and usually more expensive – regular cultivated blueberries will still give you delicious results.
Ingredient Substitutions
These protein muffins are pretty adaptable – here’s how you can switch things up:
- Blueberries: Fresh or frozen blueberries work equally well here. You can also swap them with raspberries, chopped strawberries, or even chocolate chips if you’re craving something different.
- All-purpose flour: Feel free to use whole wheat flour or a 1:1 gluten-free flour blend. Just note that whole wheat flour might make the muffins slightly denser.
- Protein powder: Any protein powder works here – whey, pea, or soy. Just stick to vanilla flavor or use unflavored and add an extra 1/2 teaspoon of vanilla extract.
- Greek yogurt: You can use regular plain yogurt, dairy-free yogurt, or even mashed banana as a substitute. If using regular yogurt, strain it first to remove excess liquid.
- Olive oil: Any neutral oil works well – try coconut oil, avocado oil, or melted butter if you prefer.
- Honey: Maple syrup, agave nectar, or regular sugar can replace honey. The sweetness level stays pretty much the same with any of these options.
Watch Out for These Mistakes
The biggest challenge when baking protein muffins is overmixing the batter – this activates too much gluten and results in dense, tough muffins instead of light and fluffy ones, so mix just until the ingredients are combined.
A common error is adding too much protein powder, which can dry out your muffins – stick to the recommended amount and make sure to balance it with enough moisture from the yogurt and oil.
To prevent your blueberries from sinking to the bottom of the muffins, toss them in a little flour before folding them into the batter, and don’t forget to check for doneness with a toothpick around the 18-minute mark since protein muffins tend to bake faster than regular ones.
For the best texture, let the muffins cool in the pan for just 5 minutes before moving them to a wire rack – leaving them in the pan too long can make the bottoms soggy.
Choosing Your Protein Powder (This is CRUCIAL!)
The protein powder you choose will have the biggest impact on the final texture and taste of your muffins.
The wrong type can make them dry or rubbery.
Here’s a quick guide to help you get it right:
- Whey Protein: This is your safest and best option for light, fluffy, bakery-style muffins. For the best results, use a vanilla-flavored whey concentrate, as it helps keep the muffins perfectly moist.
- Casein Protein: This protein absorbs much more liquid, creating a very thick batter. Your muffins will be denser, richer, and more filling—similar to a satisfying, creamy dessert.
- Plant-Based Protein: This is a great choice for a vegan-friendly muffin, but it can result in a denser, heartier texture. To ensure a great taste and avoid any “earthy” flavor, using a high-quality vanilla-flavored plant-based blend is essential.
My Top Recommendation: If you’re unsure, start with a vanilla-flavored whey concentrate. It’s the most forgiving and delivers consistently delicious results.

How to Store the Blueberry Protein Muffins
Counter Storage: These protein muffins stay fresh at room temperature for about 2 days. Just keep them in an airtight container and place a paper towel at the bottom to absorb any extra moisture. This helps keep them from getting too soft!
Refrigerate: For longer storage, pop your muffins in the fridge in a sealed container. They’ll stay good for up to a week! The paper towel trick works great here too. I like making a batch on Sunday for grab-and-go breakfasts all week.
Freeze: These muffins are perfect for freezing! Once they’re completely cool, put them in a freezer bag or container and they’ll keep for up to 3 months. When you’re ready to eat one, just let it thaw overnight in the fridge or pop it in the microwave for about 30 seconds.
| Preparation Time | 10-15 minutes |
| Cooking Time | 25-30 minutes |
| Total Time | 35-45 minutes |
| Level of Difficulty | Easy |
Estimated Nutrition
Estimated nutrition for the whole recipe (without optional ingredients):
- Calories: 1500-1700
- Protein: 60-70 g
- Fat: 90-100 g
- Carbohydrates: 160-180 g
We'll Pay You $5 to Try This Recipe!
Cook our recipe, snap some photos, and earn a $5 Amazon Gift Card. It's that simple!
Here's how:
- Make the recipe
- Take nice pictures of your final dish
- Fill out our quick form (2 minutes max!)
- Your $5 reward is on the way!
Ingredients
- 10 oz fresh blueberries
- 1 cup plain flour
- 1/2 cup vanilla-flavored protein powder
- 3/4 cup thick greek yogurt
- 1/2 cup extra-virgin olive oil
- 2 tbsp honey
- 1 large egg
- 1 tsp baking powder
- 1 tsp baking soda
- 1 tsp pure vanilla extract
Step 1: Preheat the Oven
Set your oven to preheat at 360°F (180°C).
This ensures that the muffins will bake evenly as soon as they’re placed in the oven.
Step 2: Mix the Wet Ingredients
- 1 large egg
- 2 tbsp honey
- 3/4 cup thick Greek yogurt
- 1 tsp pure vanilla extract
- 1/2 cup extra-virgin olive oil
In a large mixing bowl, combine the egg, honey, Greek yogurt, vanilla extract, and olive oil.
Whisk the ingredients together until the mixture is smooth and well blended.
Step 3: Add Dry Ingredients
- 1 cup plain flour
- 1/2 cup vanilla-flavored protein powder
- 1 tsp baking powder
- 1 tsp baking soda
Add the plain flour, vanilla-flavored protein powder, baking powder, and baking soda to the wet mixture.
Stir gently to incorporate all the dry ingredients, mixing only until combined.
Be careful not to overmix, as this can make the muffins dense.
Step 4: Fold in the Blueberries
- 10 oz fresh blueberries
Gently fold the fresh blueberries into the batter using a spatula or spoon, taking care not to crush the berries.
I always try to turn the mixture just enough to distribute the blueberries—overmixing can make the muffins purple and mushy.
Step 5: Portion and Bake the Muffins
- batter with blueberries (from Step 4)
Spoon the muffin batter into a lined muffin pan, dividing it evenly to make 12 regular-sized muffins.
Place the pan in the center of the preheated oven and bake for about 15-20 minutes, or until a toothpick inserted into the center comes out clean.
Step 6: Cool and Serve the Muffins
Remove the muffin pan from the oven and allow the muffins to rest in the pan for a few minutes to cool slightly before transferring them to a wire rack or serving plate.
This helps them hold their shape and makes them easier to handle.

Homemade Blueberry Protein Muffins
Ingredients
- 10 oz fresh blueberries
- 1 cup plain flour
- 3/4 cup thick greek yogurt
- 1/2 cup extra-virgin olive oil
- 2 tbsp honey
- 1 large egg
- 1 tsp baking powder
- 1 tsp baking soda
- 1 tsp pure vanilla extract
- 1/2 cup vanilla-flavored protein powder
Instructions
- Set your oven to preheat at 360°F (180°C). This ensures that the muffins will bake evenly as soon as they’re placed in the oven.
- In a large mixing bowl, combine the egg, honey, Greek yogurt, vanilla extract, and olive oil. Whisk the ingredients together until the mixture is smooth and well blended.
- Add the plain flour, vanilla-flavored protein powder, baking powder, and baking soda to the wet mixture. Stir gently to incorporate all the dry ingredients, mixing only until combined. Be careful not to overmix, as this can make the muffins dense.
- Gently fold the fresh blueberries into the batter using a spatula or spoon, taking care not to crush the berries. I always try to turn the mixture just enough to distribute the blueberries—overmixing can make the muffins purple and mushy.
- Spoon the muffin batter into a lined muffin pan, dividing it evenly to make 12 regular-sized muffins. Place the pan in the center of the preheated oven and bake for about 15-20 minutes, or until a toothpick inserted into the center comes out clean.
- Remove the muffin pan from the oven and allow the muffins to rest in the pan for a few minutes to cool slightly before transferring them to a wire rack or serving plate. This helps them hold their shape and makes them easier to handle.
Wonderful! My protein powder absorbs so much liquid that I had to add nearly a cup of skim milk to this recipe just so I could fold in the blueberries. Figured I had ruined it but no! They’re amazing, thank you for sharing your recipe!!
These turned out pretty well! But like the previous commenter, the protein powder does make the mixture very dense. I did not add milk, but it was almost like working with a dough so I had to kind of manually add the blueberries into each muffin cup. My muffins started browning at around 18 min, so if I would have kept them in for 25 they definitely would have burned. So I’d suggest just keeping an eye on them!
they were very delicious but are a lot of calories.
The calories count is for the whole batch. So you have to divide by 12. Works out to about 130-150 calories per muffin
Like previous comments mentioned, after adding the protein powder the mixture became VERY thick! I added milk like one of the commenters said, but they still turned out great! I also added peaches and strawberries instead of blueberries, and coconut oil instead of olive oil!
Made it with two small eggs (singe the farm I get them from only have medium / small ones ☺️), vanilla organic Greek yogurt and frozen blueberries 🫐
The rest as the recipe indicates and it came out delicious! My husband and kids ate the first batch in one afternoon 😅
I’ve tried them with chocolate chips in mini muffins and done the regular blueberry muffins again! 🙌
How much protein powder do you add? This is not in the ingredients list.
Delish! Just made them! I used frozen wild blueberries and 10oz was way too much, only added about half and it was still too much. They tasted so good! Will definitely make again either less blueberries. Also keep an eye on them like other commenters said, if left in whole time they would burn.
I also subbed the oil for applesauce!!
Thanks for recipe!
When you subbed the applesauce for oil, was it a straight 1:1 swap? Thanks!
I ran out of yogourt but used a frozen banana I had and they are amazing! I love this can’t wait to try them again with the yogourt. Oh and I made them minis.
Photo of the cooked recipe