Whisk together the olive oil, lemon juice, minced garlic, oregano, thyme, Dijon mustard, salt, pepper, and red pepper flakes in a bowl until well combined. Pat the chicken thighs dry with paper towels to help them absorb the marinade better, then place them in a large bowl or zip-top bag. Pour the marinade over the chicken, making sure each thigh is well coated. Cover and refrigerate for at least 1-2 hours, or up to 8 hours for deeper flavor—the acid from the lemon juice will gently tenderize the meat while the garlic and herbs infuse throughout.